IPK Gatersleben - BRIDGE Web Portal

General Filter

Passport attributes

Country of origin

Annuality

Row type

Subspecies

Status

Collection site

Donor institute

Only germplasm with a photo

Only germplasm with phenotypic data

Other attributes

Part of core collection*

Accession number prefix

* as descibed in Milner et al. (2019)

Phenotypic Trait Filter

Spike

Row-Type-Convarity

Spike density

Spike branching

Spike brittleness

Awns

Awns roughness

Awns central spikelets

Awns lateral spikelets

Awns on glumes

Grain

Grain hull / Cover of caryopses

Color of naked seeds

Rachilla hairs

Glume

Glume width

Color of glumes

Variant Filter

Accession Number Filter

Insert a comma separated list of accession numbers e.g. "HOR 1, HOR 2"

Search result

germplasm samples were found with your given search criterions.

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Jump to a gene:

Please note that the marker matrices analyzed by Milner et al. (2019), Nature Genetics and released as DOI:10.5447/IPK/2018/9 are a subset of the matrices accessible in the BRIDGE WEB PORTAL.

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Explained variance per principle component:

PC1	PC2	PC3	PC4	PC5	PC6	PC7	PC8	PC9	PC10
2.46 %	2.36 %	1.26 %	0.88 %	0.81 %	0.66 %	0.60 %	0.52 %	0.50 %	0.41 %

Explained variance per principle component:

PC1	PC2	PC3	PC4	PC5	PC6	PC7	PC8	PC9	PC10
11.91 %	8.89 %	6.13 %	2.65 %	2.16 %	2.03 %	1.74 %	1.34 %	1.14 %	0.99 %

Explained variance per principle component:

PC1	PC2	PC3	PC4	PC5	PC6	PC7	PC8	PC9	PC10
10.45 %	9.72 %	4.98 %	2.75 %	2.47 %	1.99 %	1.69 %	1.54 %	1.06 %	0.99 %

Transparency adjustment sliders:

Interactive worldmap: Clicking on a country highlights the corresponding samples in the scatterplot on the left. By holding down the Shift-key while clicking you can select multiple countries at once.

Dataset:

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Pheno parallelplot

Trait:

By clicking on a point in the plot you will be directly redirected to the corresponding position in the SNP Browser.

Subpopulation A:

Subpopulation B:

Germplasm details

Passport data Phenotypic data Photo

Passport data at project start

Important hint: The following passport data reflects the state of data at the beginning of the project, which was also the basis for data analyses such as GWAS and genetic clustering. Passport data is mutable and can change due to the data curation of the responsible genebank during the course of the project or after the end of the project. Changes in the passport data that occurred afterwards are listed in the area one below with the title "Passport data changelog".

Passport data changelog

Phenotypic data

Photo

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Saved germplasm collections

Predefined collections:

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